PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18389.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 567aa    MW: 62601.7 Da    PI: 9.3419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18389.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14266316255
                 HHHHHHHHHHHHHHHHHH.HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsa.feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r +h++ E+rRR++iN++ f+ Lrel+P++    ++K +Ka+ L ++veYI+ Lq
  KHN18389.1 266 RSKHSATEQRRRSKINDRqFQMLRELIPHS----DQKRDKASFLLEVVEYIHFLQ 316
                 889*************9768*********9....9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-21261338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15262336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.798264315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-13266320No hitNo description
PfamPF000103.0E-12266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-11270321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MELPQARPLG TEGRKPMHDF LSLYSNSTAQ QDPRLPSQGS YLKTHDFLQP LERVETKACA  60
KEEATEEILS VVQKQRPPSV EHLLPGGIGT YSISHISYVN NNNNQRGVLK PETSSLFVRQ  120
ATSTDKNEEN SNCSSYTSSG FTLWEESSGK RGNTGKENNA GEKPSLGVTE SAAKLGQWTS  180
TERTSQSFSN NRHGGFSSRS SSQTTGQKNQ SFIEMMKSAR DSNAQDEVLE SEETFFLKKE  240
PSSNTQRELR VKVDAKSTDQ KPNTPRSKHS ATEQRRRSKI NDRQFQMLRE LIPHSDQKRD  300
KASFLLEVVE YIHFLQEKVH KYEGSFQGWS NEPEKLMPWR NNDKPAETFQ PRGTDNGSSP  360
SPTLLFASKV DEKNITISQT IPGSTQNVES GLSSATTPKT MDHHAGMMNK AFPIPIPSQL  420
NFFTPTQIGG PGGVVSQLTH RSASDAEKTK YQPSVECQTM TATNEKLKEK ELTIEGGAIS  480
ISSVYSKGLL HTLTHALQSS GVDLSQASIS VQIELGKQAN IRPSVPVSVC AAKDGDVHSN  540
NQKMMRSRVA SSGKSDQAVK KLKTCRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-128AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549583.10.0PREDICTED: transcription factor BIM1 isoform X2
SwissprotQ9LEZ31e-122BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A0B2QEC90.0A0A0B2QEC9_GLYSO; Transcription factor BIM1
STRINGGLYMA17G08980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-123bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]